replay_trajectory_classification.likelihoods.calcium_likelihood.estimate_calcium_likelihood

estimate_calcium_likelihood(calcium_activity: ndarray, place_fields: ndarray, scales: ndarray, is_track_interior: ndarray | None = None) → ndarray

Find the likelihood given a fitted place field model.

Parameters:

• calcium_activity (np.ndarray, shape (n_time, n_neurons)) – Deconvolved activity rate estimated from the fluorescence level.

• place_fields (np.ndarray, shape (n_bins, n_neurons))

• scales (np.ndarray, shape (n_neurons,))

• is_track_interior (None or np.ndarray, optional, shape (n_bins, n_position_dims))

Returns:

likelihood

Return type:

np.ndarray, shape (n_time, n_bins)