replay_trajectory_classification.likelihoods.calcium_likelihood

Calculate a Gamma likelihood for calcium imaging activity traces.

References

[1] Farhoodi, S., Plitt, M.H., Giocomo, L., and Eden, U.T. (2020). Estimating Fluctuations in Neural Representations of Uncertain Environments. 20. .

Functions

combined_likelihood	Combines the likelihoods of all the cells.
estimate_calcium_likelihood	Find the likelihood given a fitted place field model.
estimate_calcium_place_fields	Gives the conditional intensity of the neurons' spiking with respect to position.
gamma_log_likelihood	Probability of parameters given spiking at a particular time.
get_activity_rate	Predicts the calcium activity trace given fitted model coefficents.
make_spline_design_matrix	Creates a design matrix for regression with a position spline basis.
make_spline_predict_matrix	Make a design matrix for position bins