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replay_trajectory_classification 1.4.1 documentation

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  • replay_trajectory_classification.classifier
    • replay_trajectory_classification.classifier.ClusterlessClassifier
    • replay_trajectory_classification.classifier.SortedSpikesClassifier
  • replay_trajectory_classification.clusterless_simulation
    • replay_trajectory_classification.clusterless_simulation.make_continuous_replay
    • replay_trajectory_classification.clusterless_simulation.make_fragmented_continuous_fragmented_replay
    • replay_trajectory_classification.clusterless_simulation.make_fragmented_hover_fragmented_replay
    • replay_trajectory_classification.clusterless_simulation.make_fragmented_replay
    • replay_trajectory_classification.clusterless_simulation.make_hover_continuous_hover_replay
    • replay_trajectory_classification.clusterless_simulation.make_hover_replay
    • replay_trajectory_classification.clusterless_simulation.make_simulated_run_data
  • replay_trajectory_classification.continuous_state_transitions
    • replay_trajectory_classification.continuous_state_transitions.estimate_movement_var
    • replay_trajectory_classification.continuous_state_transitions.EmpiricalMovement
    • replay_trajectory_classification.continuous_state_transitions.Identity
    • replay_trajectory_classification.continuous_state_transitions.RandomWalk
    • replay_trajectory_classification.continuous_state_transitions.RandomWalkDirection1
    • replay_trajectory_classification.continuous_state_transitions.RandomWalkDirection2
    • replay_trajectory_classification.continuous_state_transitions.Uniform
  • replay_trajectory_classification.core
    • replay_trajectory_classification.core.atleast_2d
    • replay_trajectory_classification.core.check_converged
    • replay_trajectory_classification.core.get_centers
    • replay_trajectory_classification.core.mask
    • replay_trajectory_classification.core.normalize_to_probability
    • replay_trajectory_classification.core.scaled_likelihood
  • replay_trajectory_classification.decoder
    • replay_trajectory_classification.decoder.ClusterlessDecoder
    • replay_trajectory_classification.decoder.SortedSpikesDecoder
  • replay_trajectory_classification.discrete_state_transitions
    • replay_trajectory_classification.discrete_state_transitions.estimate_discrete_state_transition
    • replay_trajectory_classification.discrete_state_transitions.expected_duration
    • replay_trajectory_classification.discrete_state_transitions.DiagonalDiscrete
    • replay_trajectory_classification.discrete_state_transitions.RandomDiscrete
    • replay_trajectory_classification.discrete_state_transitions.UniformDiscrete
    • replay_trajectory_classification.discrete_state_transitions.UserDefinedDiscrete
  • replay_trajectory_classification.environments
    • replay_trajectory_classification.environments.diffuse
    • replay_trajectory_classification.environments.diffuse_each_bin
    • replay_trajectory_classification.environments.extract_bin_info_from_track_graph
    • replay_trajectory_classification.environments.get_bin_ind
    • replay_trajectory_classification.environments.get_grid
    • replay_trajectory_classification.environments.get_n_bins
    • replay_trajectory_classification.environments.get_track_boundary
    • replay_trajectory_classification.environments.get_track_boundary_points
    • replay_trajectory_classification.environments.get_track_grid
    • replay_trajectory_classification.environments.get_track_interior
    • replay_trajectory_classification.environments.get_track_segments_from_graph
    • replay_trajectory_classification.environments.make_track_graph_with_bin_centers_edges
    • replay_trajectory_classification.environments.order_boundary
    • replay_trajectory_classification.environments.project_points_to_segment
    • replay_trajectory_classification.environments.run_diffusion
    • replay_trajectory_classification.environments.Environment
  • replay_trajectory_classification.initial_conditions
    • replay_trajectory_classification.initial_conditions.UniformInitialConditions
    • replay_trajectory_classification.initial_conditions.UniformOneEnvironmentInitialConditions
  • replay_trajectory_classification.observation_model
    • replay_trajectory_classification.observation_model.ObservationModel
  • replay_trajectory_classification.simulate
    • replay_trajectory_classification.simulate.get_trajectory_direction
    • replay_trajectory_classification.simulate.simulate_multiunit_with_place_fields
    • replay_trajectory_classification.simulate.simulate_neuron_with_place_field
    • replay_trajectory_classification.simulate.simulate_place_field_firing_rate
    • replay_trajectory_classification.simulate.simulate_poisson_spikes
    • replay_trajectory_classification.simulate.simulate_position
    • replay_trajectory_classification.simulate.simulate_position_with_pauses
    • replay_trajectory_classification.simulate.simulate_time
  • replay_trajectory_classification.sorted_spikes_simulation
    • replay_trajectory_classification.sorted_spikes_simulation.make_continuous_replay
    • replay_trajectory_classification.sorted_spikes_simulation.make_fragmented_continuous_fragmented_replay
    • replay_trajectory_classification.sorted_spikes_simulation.make_fragmented_hover_fragmented_replay
    • replay_trajectory_classification.sorted_spikes_simulation.make_fragmented_replay
    • replay_trajectory_classification.sorted_spikes_simulation.make_hover_continuous_hover_replay
    • replay_trajectory_classification.sorted_spikes_simulation.make_hover_replay
    • replay_trajectory_classification.sorted_spikes_simulation.make_simulated_run_data
    • replay_trajectory_classification.sorted_spikes_simulation.make_theta_sweep
  • replay_trajectory_classification.standard_decoder
    • replay_trajectory_classification.standard_decoder.convert_polar_to_slope_intercept
    • replay_trajectory_classification.standard_decoder.detect_line_with_radon
    • replay_trajectory_classification.standard_decoder.isotonic_regression
    • replay_trajectory_classification.standard_decoder.linear_regression
    • replay_trajectory_classification.standard_decoder.map_estimate
    • replay_trajectory_classification.standard_decoder.normalize_to_posterior
    • replay_trajectory_classification.standard_decoder.poisson_mark_log_likelihood
    • replay_trajectory_classification.standard_decoder.predict_mark_likelihood
    • replay_trajectory_classification.standard_decoder.predict_poisson_likelihood
    • replay_trajectory_classification.standard_decoder.weighted_correlation
  • replay_trajectory_classification.likelihoods.calcium_likelihood
    • replay_trajectory_classification.likelihoods.calcium_likelihood.combined_likelihood
    • replay_trajectory_classification.likelihoods.calcium_likelihood.estimate_calcium_likelihood
    • replay_trajectory_classification.likelihoods.calcium_likelihood.estimate_calcium_place_fields
    • replay_trajectory_classification.likelihoods.calcium_likelihood.gamma_log_likelihood
    • replay_trajectory_classification.likelihoods.calcium_likelihood.get_activity_rate
    • replay_trajectory_classification.likelihoods.calcium_likelihood.make_spline_design_matrix
    • replay_trajectory_classification.likelihoods.calcium_likelihood.make_spline_predict_matrix
  • replay_trajectory_classification.likelihoods.diffusion
    • replay_trajectory_classification.likelihoods.diffusion.estimate_diffusion_position_density
    • replay_trajectory_classification.likelihoods.diffusion.estimate_diffusion_position_distance
  • replay_trajectory_classification.likelihoods.multiunit_likelihood
    • replay_trajectory_classification.likelihoods.multiunit_likelihood.estimate_intensity
    • replay_trajectory_classification.likelihoods.multiunit_likelihood.estimate_log_intensity
    • replay_trajectory_classification.likelihoods.multiunit_likelihood.estimate_log_joint_mark_intensity
    • replay_trajectory_classification.likelihoods.multiunit_likelihood.estimate_multiunit_likelihood
    • replay_trajectory_classification.likelihoods.multiunit_likelihood.estimate_position_density
    • replay_trajectory_classification.likelihoods.multiunit_likelihood.estimate_position_distance
    • replay_trajectory_classification.likelihoods.multiunit_likelihood.fit_multiunit_likelihood
    • replay_trajectory_classification.likelihoods.multiunit_likelihood.gaussian_pdf
  • replay_trajectory_classification.likelihoods.multiunit_likelihood_gpu
    • replay_trajectory_classification.likelihoods.multiunit_likelihood_gpu.estimate_multiunit_likelihood_gpu
    • replay_trajectory_classification.likelihoods.multiunit_likelihood_gpu.fit_multiunit_likelihood_gpu
  • replay_trajectory_classification.likelihoods.multiunit_likelihood_integer
    • replay_trajectory_classification.likelihoods.multiunit_likelihood_integer.estimate_intensity
    • replay_trajectory_classification.likelihoods.multiunit_likelihood_integer.estimate_log_intensity
    • replay_trajectory_classification.likelihoods.multiunit_likelihood_integer.estimate_log_joint_mark_intensity
    • replay_trajectory_classification.likelihoods.multiunit_likelihood_integer.estimate_multiunit_likelihood_integer
    • replay_trajectory_classification.likelihoods.multiunit_likelihood_integer.estimate_position_density
    • replay_trajectory_classification.likelihoods.multiunit_likelihood_integer.estimate_position_distance
    • replay_trajectory_classification.likelihoods.multiunit_likelihood_integer.fit_multiunit_likelihood_integer
    • replay_trajectory_classification.likelihoods.multiunit_likelihood_integer.gaussian_pdf
    • replay_trajectory_classification.likelihoods.multiunit_likelihood_integer.normal_pdf_integer_lookup
  • replay_trajectory_classification.likelihoods.multiunit_likelihood_integer_gpu
    • replay_trajectory_classification.likelihoods.multiunit_likelihood_integer_gpu.estimate_multiunit_likelihood_integer_gpu
    • replay_trajectory_classification.likelihoods.multiunit_likelihood_integer_gpu.fit_multiunit_likelihood_integer_gpu
  • replay_trajectory_classification.likelihoods.spiking_likelihood_glm
    • replay_trajectory_classification.likelihoods.spiking_likelihood_glm.combined_likelihood
    • replay_trajectory_classification.likelihoods.spiking_likelihood_glm.estimate_place_fields
    • replay_trajectory_classification.likelihoods.spiking_likelihood_glm.estimate_spiking_likelihood
    • replay_trajectory_classification.likelihoods.spiking_likelihood_glm.get_firing_rate
    • replay_trajectory_classification.likelihoods.spiking_likelihood_glm.make_spline_design_matrix
    • replay_trajectory_classification.likelihoods.spiking_likelihood_glm.make_spline_predict_matrix
    • replay_trajectory_classification.likelihoods.spiking_likelihood_glm.poisson_log_likelihood
  • replay_trajectory_classification.likelihoods.spiking_likelihood_kde
    • replay_trajectory_classification.likelihoods.spiking_likelihood_kde.combined_likelihood
    • replay_trajectory_classification.likelihoods.spiking_likelihood_kde.estimate_place_fields_kde
    • replay_trajectory_classification.likelihoods.spiking_likelihood_kde.estimate_position_density
    • replay_trajectory_classification.likelihoods.spiking_likelihood_kde.estimate_position_distance
    • replay_trajectory_classification.likelihoods.spiking_likelihood_kde.estimate_spiking_likelihood_kde
    • replay_trajectory_classification.likelihoods.spiking_likelihood_kde.gaussian_pdf
    • replay_trajectory_classification.likelihoods.spiking_likelihood_kde.get_diffusion_firing_rate
    • replay_trajectory_classification.likelihoods.spiking_likelihood_kde.get_firing_rate
    • replay_trajectory_classification.likelihoods.spiking_likelihood_kde.poisson_log_likelihood
  • replay_trajectory_classification.likelihoods.spiking_likelihood_kde_gpu
    • replay_trajectory_classification.likelihoods.spiking_likelihood_kde_gpu.estimate_place_fields_kde_gpu
    • replay_trajectory_classification.likelihoods.spiking_likelihood_kde_gpu.estimate_spiking_likelihood_kde_gpu
  • API Reference
  • replay_trajectory_classification.likelihoods.spiking_likelihood_kde_gpu

replay_trajectory_classification.likelihoods.spiking_likelihood_kde_gpu#

Estimates a Poisson likelihood using place fields estimated with a KDE using GPUs

Functions

estimate_place_fields_kde_gpu

estimate_spiking_likelihood_kde_gpu

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